Dolls takes puppeteering as its overriding motif, which relates thematically to the action provided by the live characters. Chief among those tales is the story of Matsumoto and Sawako, a young couple whose relationship is about to be broken apart by the former's parents, who have insisted their son take part in an arranged marriage to his boss' daughter.
Ishimori Uka is very shy and has a hard time making friends. When she was a middle school student, students made fun of her by calling her "stone". Around that time, she met Miura Kai with lemon color hair. Because of him, she entered the same high school. Uka now wants to overcome her shyness and have friends. Kai is a popular student at the school, but he doesn't talk much or seem interested in others. He doesn't know why, but he becomes concerned with Uka. Uka has admired Kai, and she now has feelings for him. Kai has a secret, which no one knows.
Yori and his twin sister Iku used to be very close as children but lately Yori has grown colder toward Iku and is always eager to stay away from her. Iku was confused by Yori's attitude. Actually Yori is in love with Iku and that forbidden love is causing Yori sleepless nights since Yori and Iku are sharing the same room with bunk beds. Yori tried to ease his intense desire for Iku by bedding Iku's best friend. He had even applied to attend a boarding school in another city to take him far away from Iku. Yori lost his resolve to stay quiet about his feelings when Iku started to talk about having a boyfriend and going on dates. Now Yori want to have his little sister and he confessed. Iku loves her big brother and wanted them to stay together, so Iku is willing to anything to keep them together. But Yori wanted to have Iku as a lover, not as a sister loyal to her twin.
A young girl named Ann moves with her mother to her mother's hometown after her parents go through a divorce. There, Ann meets her first love Daigo Kitamura. Daigo helps her get used to life in the country. Ann even gets through her mother's suicide.
Mei Tachibana is a high school student. Due to a traumatic incident when she was a kid, Mei has been unable to make friends or have boyfriends. By mistake, Mei then injures the most popular male student named Yamato Kurosawa. Somehow, Yamato Kurosawa likes Mei Tachibana and tells everyone unilaterally that Mei is his friend. One day, Yamato Kurosawa saves Mei Tachibana from a stalker by kissing her. From that kiss, their love story begins.
During the Taisho era of 1918, 17-year-old Benio Hanamura thrives on bucking tradition. As a boisterous and quarrelsome tomboy, Miss Hanamura leads a life of kendo and tree-climbing adventure with her best friends Tamaki and Ranmaru. Benio determines to find love on her own, though her family has other plans. Benio will encounter tests of love, independence, and friendship during wartime.
Setoka Tachibana is a female high school student who has confessed her feelings to other boys 12 times, but has been rebuffed each time. Her older brother Haruka Tachibana cares for his younger sister deeply, but he keeps secret from her that they are not blood related. One day, Setoka's first love Takane Serikawa appears after many years and approaches her.
Sisters Mariko and May, along with Mariko's bad-tempered boyfriend, become involved with Ichiro, an arrogant, womanising male model.
Karen is an ordinary high school student in Tokyo, but she sometimes recalls pieces of her childhood memories that she did not know before. During the process of getting her passport for a school trip, Karen views her family register. She learns that she had an older sister Yukari, who died at the age of 4. Karen also learns that her parents are not her biological parents and that she was adopted. Karen now wants to learn about herself. She lies to her parents and tells them that she is leaving on the school trip. Instead, she travels to Fukuoka where she was born. Her classmate Satoi Hogari accompanies her.
Jack has moved to Hokkaido to get treatment for an illness, but he's lonely and unhappy. One night a man on a horse rides through his window to help him. For a reason he doesn't understand, Jack instantly knows the man's name and feels they've met somewhere before. The man, Cu Chulainn, tells Jack to open the moonlight shadow window, which leads him to Nymphidia, the world of Midsummer Night's Dream, whose inhabitants are waiting for a new Fairy King.
In middle school, Futaba Yoshioka was madly in love with Tanaka Kou but he moves away with his mother. She is reunited with him later in life but he is not the same person anymore.
Patalliro du Malyner VIII is the crown prince of Malynera, a kingdom that produces diamonds. Despite being ugly and mischievous, he is loyal and fair. Many enemies of the throne, including Malynera's Prime Minister, plan to get rid of him and take control of the rich nation. Patalliro, however, has the protection of Jack Barbarosa Bancoran, his haughty and extremely handsome bodyguard, who will protect him even from the latter's own lover, the beautiful bishonen hitman Maraich Juschenfe and other assassins.
Tamaki becomes a captive of the vast beauty of the skies from the moment Kuramochi takes her under his wing and up for a flight in a glider.
Eriko Ichimura has an ordinary and unnoticed student life at her high school. Her only joy is to watch popular male student Akira Omi and imagine them being a couple. She writes down those thoughts on her social media account under the name of Lovesick Ellie. Akira Omi seems like a perfect guy, with good looks and gentle personality. One day, she witnesses Akira Omi spouting vulgar language and she realizes he is kind of like a two-faced person. Making things worse, her fantasy thoughts are discovered by him. He thinks that she is funny and he approaches her.
One day, Shiro's all-time favorite idol Mami Mitsuya suddenly appears right in front of him! Even though this meeting left him excited, his partner Kenji ends up unhappy. Moreover, the appearance of a new partner and Shiro's work situation have led to the relationship between the two changing...
In war-torn Japan, the Tokugawa Shogun, desperate to restore peace to his people, orders the assassination of the hostile warlords. A beautiful young woman is raised from birth with nine other orphans, to become an assassin. Her name is Azumi, the ultimate assassin.
When Ritsu Onodera changes jobs, looking for a fresh start, he's not exactly thrilled when his new boss turns out to be his old flame. Ritsu's determined to leave all that in the past—but how can he when his boss is just as determined that they have a future? Tired of accusations that family connections got him his current position, Ritsu Onodera quits his job as an editor at his father's company and transfers to Marukawa Publishing. Once there, he is assigned to the shojo manga editorial department—something he has no interest in and no experience with! Having sworn he'd never fall in love again, the last thing he wants to do is work on love stories. To make matters worse, it turns out that his overbearing boss, Masamune Takano, is actually his first love from high school!
Madoka Kamei, the top delinquent at Kōō High, is stuck in a rut—failing school, and out of the game when it comes to both love and fights. That changes when his rival, Mitsuru Satō from Shiraiwa High, suddenly appears—not to brawl, but to announce he’s moving into the apartment above Madoka’s grandma’s candy shop. The unexpected closeness between the two stirs up chaos. Madoka tries to bridge the gap with his usual big-brother charm, but Mitsuru’s true intentions remain a mystery…
Before he was a protector, Kenshin was a fearsome assassin known as Battosai. But when he meets gentle Tomoe Yukishiro, a beautiful young woman who carries a huge burden in her heart, his life will change forever.
Story takes place 2 years after "Chihayafuru Part 2" and Chihaya is now a high school senior.