When scientists start to go missing in the 20th century, the Doctor is called in by the Brigadier to investigate. His investigations lead him to deduce that they are being kidnapped through time and he sets off in pursuit, unknowingly kidnapping journalist Sarah Jane Smith in the process. Arriving in the middle ages, the Doctor and Sarah find themselves caught up in the machinations of the robber baron Irongron and his man from the stars. The alien, a Sontaran named Linx, is arming him with modern weapons in return for helping him repair his damaged ship, and it's up to the Doctor and Sarah to stop him from ruining the Earth's timeline.
The Third Doctor and Sarah arrive in 1970s London to find it has been evacuated because dinosaurs have appeared mysteriously. It turns out the dinosaurs are being brought to London via a time machine to further a plan to revert London to a pre-technological level.
An energy drain traps the Third Doctor and Sarah Jane Smith on the planet Exxilon with its hostile natives, causing the travellers to make an uneasy alliance with a Marine Space Corps expedition and a squadron of Daleks. The key to escape for all of them lies at the heart of a powerful and mysterious lost city, but only after a series of deadly traps.
The Doctor returns to Peladon fifty years after his last visit, to find Queen Thalira, daughter of the late King Peladon, on the throne. A tense labour dispute between Pel nobility and miners is worsened when apparitions of their deity Aggedor attack and kill several miners. The Galactic Federation desperately needs trisilicate for its war against Galaxy 5 and sends in brutal Ice Warrior troopers to ensure production. The Doctor discovers a devious plot at the heart of Aggedor's appearances.
The blue crystal that the Doctor took from Metebelis III in a previous adventure is desperately sought by the Eight Legs, a race of mutated spiders, as the final element in their plan for universal domination. With help from an old mentor, the Doctor realises the only way to foil the plot is to make the ultimate sacrifice. The Doctor must risk death to return to the cave of the Great One and save the universe.
The story revolves around the lost planet Shada, on which the Time Lords built a prison for defeated would-be conquerors of the universe. Skagra, one such inmate, needs the help of one of the prison's inmates. He finds nobody knows where Shada is anymore except one aged Time Lord who has retired to Earth, where he is a professor at St. Cedd's College, Cambridge. Luckily for the universe, Skagra's attempt to force the information out of Professor Chronotis coincides with a visit by the professor's old friend, the Doctor. (Filming for this story was never finished, and in this version the story is completed via on-camera narration.)
An alien intelligence hitches a ride onboard the TARDIS to 15th century Italy, where a deranged astrologer attempts to harness its power.
Summoned back to Gallifrey, the Doctor is framed for the assassination of the Time Lord President. To prove his innocence, he must stand for election himself, uncover the traitor in the Time Lord High Council, fight a hooded killer in a nightmare cyberspace world of his enemy's devising and battle against an old foe now out to destroy the Time Lords: The Master.
The Doctor arrives on a planet where two tribes, the savage Sevateem and the technically brilliant Tesh, are at war. He meets Leela, an exile from the Sevateem, and discovers that the tribes' god of evil is apparently himself...
Charged with genocide by the treacherous Valeyard at his trial, the Doctor receives help from an unlikely source to turn the tide of the High Council's rulings in his favour and reveal the Valeyard as a wrongdoer: the Master. For the Valeyard's own crimes are so atrocious, even the Doctor's archenemy will help him to ensure that the villain won't see the light of day again. Cornered, the Valeyard flees to the Matrix, where he can be the Doctor's judge, jury and executioner...
As evidence for the defense at his ongoing trial, the Doctor presents an adventure from his future when he is travelling with a computer programmer named Mel. Answering a mysterious distress call from the space liner Hyperion III, they find that the passengers aboard include unscrupulous scientists, secret agents, saboteurs, thieves and a murderer. And lurking in the shadows are the Vervoids, the product of sinister botanical experiments, who will stop at nothing to destroy all non-plant life.
As the Doctor's trial continues, evidence is presented showing his most recent adventure, one where he faces an old adversary, Sil. As a scientist conducts his unethical experiments to prolong the life of Sil's boss Kiv, the Doctor's memories of the events begins to return and an unpleasant surprise awaits him.
The Doctor is summoned before the High Council of Time Lords to stand trial for the charges of harmful interference to the course of events during his travels which have threatened the sanctity of the universe. Indignant at these accusations, the Doctor pleads his case to the Inquisitor with the hope that she will see him as a source of hope and goodwill for existence. However, his prosecuting attorney, a sinister Time Lord known simply as the Valeyard, begins a crusade against the Doctor with the motive of framing him as a villainous renegade.
A race of giant Gastropods has taken over the planet Jaconda. Their leader, Mestor, now intends to cause an enormous explosion in order to spread his people's eggs throughout the galaxy, and he kidnaps juvenile twin geniuses from Earth to work out the necessary mathematical equations. Space fighters led by Lieutenant Hugo Lang are dispatched to get the twins back, but they come under attack and Lang is the sole survivor when his ship crashes on the asteroid Titan III. A newly regenerated Doctor and Peri become involved and help Jaconda's elderly former ruler Professor Edgeworth, who is really a Time Lord named Azmael, to defeat Mestor and free the planet's bird-like indigenous people from the gastropods' reign of terror. Azmael, however, sacrifices his life in the process.
At the Tranquil Repose mortuary, the Doctor and Peri uncover a sinister plot to create a new breed of Daleks under the supervision of the mysterious Great Healer.
The Doctor and Peri arrive on Karfel, a planet ruled by fear where the enemies of its ruler, the despotic Borad, are banished into a time tunnel known as the Timelash.
Suddenly gripped by a memory of being executed in his second incarnation, the Sixth Doctor travels to Seville to save his past self and ensure his own existence in his present.
The Doctor discovers his old enemy the Master is intent on preventing Earth's industrial revolution in 19th century England. But the Rani, a second rogue Time Lord, has plans of her own...
An alien distress call draws the Doctor and Peri to Earth, 1985, where they uncover a Cyberman plot to change the course of history.
Captured in a time corridor, the Doctor and his companions are forced to land on 20th century Earth, diverted by the Doctor's oldest enemy - the Daleks. It is here the true purpose of the time corridor becomes apparent: after ninety years of imprisonment, Davros, the ruthless creator of the Daleks, is to be liberated to assist in the resurrection of his army. Not even the Daleks foresee the poisonous threat of their creator. Indeed, who would suspect Davros of wanting to destroy his own Daleks - and why? Only the Doctor knows the truth. Will he descend to Davros' level of evil to stop him?